STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_3295DNA photolyase FAD-binding protein; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR018394: IPR002081: IPR005101; KEGG: chl:Chy400_0772 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; SPTR: Deoxyribodipyrimidine photo-lyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase. (559 aa)    
Predicted Functional Partners:
Isop_1136
DNA photolyase FAD-binding protein; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR005101; KEGG: rca:Rcas_4249 deoxyribodipyrimidine photolyase-like protein; PFAM: DNA photolyase FAD-binding; SPTR: Probable deoxyribodipyrimidine photolyase; PFAM: FAD binding domain of DNA photolyase.
  
     0.771
Isop_1137
COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357: IPR005101; KEGG: rrs:RoseRS_0009 deoxyribodipyrimidine photolyase-related protein; PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; SPTR: Deoxyribodipyrimidine photolyase-related protein; PFAM: FAD binding domain of DNA photolyase; Deoxyribodipyrimidine photo-lyase-related protein.
 
   
 0.771
Isop_3505
Rhodopsin; COGs: COG5524 Bacteriorhodopsin; InterPro IPR017402: IPR001425: IPR018229; KEGG: srm:SRM_01698 Xanthorhodopsin; PFAM: rhodopsin; SPTR: Xanthorhodopsin; PFAM: Bacteriorhodopsin-like protein.
  
   
 0.565
Isop_3155
COGs: COG3424 naringenin-chalcone synthase; InterPro IPR011141: IPR001099: IPR012328; KEGG: syw:SYNW0993 putative chalcone synthase; PFAM: chalcone and stilbene synthase domain protein; PRIAM: Naringenin-chalcone synthase; SPTR: Chalcone synthase (CHS); PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain.
    
   0.560
Isop_0797
Protein of unknown function DUF2309; COGs: COG3002 conserved hypothetical protein; InterPro IPR018752; KEGG: chl:Chy400_1924 hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2309); Belongs to the UPF0753 family.
  
     0.535
Isop_3052
TspO and MBR like protein; COGs: COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog); InterPro IPR004307; KEGG: sti:Sthe_0774 TspO and MBR like protein; PFAM: TspO/MBR family protein; SPTR: TspO and MBR like protein; PFAM: TspO/MBR family.
 
  
 0.469
Isop_2501
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.467
Isop_1085
Uncharacterized conserved protein UCP037205; InterPro IPR017136; KEGG: dge:Dgeo_1820 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: Zn-ribbon protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2256).
 
     0.414
Isop_3296
Hypothetical protein; InterPro IPR013424; KEGG: aga:AgaP_AGAP003607 AGAP003607-PA; SPTR: AGAP003607-PA; PFAM: FG-GAP repeat.
       0.405
Isop_3294
DNA methylase N-4/N-6 domain protein; COGs: COG0863 DNA modification methylase; InterPro IPR002052: IPR002295: IPR002941; KEGG: rrs:RoseRS_0124 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; SPTR: Site-specific DNA-methyltransferase (Adenine-specific); PFAM: DNA methylase.
       0.401
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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