STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3328InterPro IPR003400; KEGG: mca:MCA0632 biopolymer ExbD/TolR family transporter; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein, ExbD/TolR family; PFAM: Biopolymer transport protein ExbD/TolR. (246 aa)    
Predicted Functional Partners:
Isop_3327
Hypothetical protein; KEGG: ank:AnaeK_3746 response regulator receiver protein; SPTR: Excinuclease ABC subunit A.
       0.780
Isop_3329
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: plm:Plim_3761 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR.
       0.780
Isop_3326
Hypothetical protein; InterPro IPR002035; KEGG: plm:Plim_3001 von Willebrand factor type A; SPTR: von Willebrand factor type A; PFAM: Sec23/Sec24 trunk domain.
       0.773
Isop_1644
PDZ/DHR/GLGF domain protein; InterPro IPR001478; KEGG: rmr:Rmar_0910 glycosyl hydrolase BNR repeat-containing protein; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Glycosyl hydrolase BNR repeat-containing protein; PFAM: BNR/Asp-box repeat.
  
 
 0.760
Isop_1430
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440: IPR020053; KEGG: rca:Rcas_1124 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; manually curated.
  
 
 0.739
Isop_3330
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: plm:Plim_3807 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable tolQ protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
   0.728
Isop_0227
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: plm:Plim_0746 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family.
  
   0.518
Isop_1771
Hypothetical protein; KEGG: psl:Psta_2465 MotA/TolQ/ExbB proton channel; SPTR: Probable biopolymer transport ExbB-related protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
   0.518
Isop_2617
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: plm:Plim_3131 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable tolQ protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
   0.518
Isop_2860
KEGG: plm:Plim_0513 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
   0.518
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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