STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3343COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR000515: IPR007210; KEGG: cse:Cseg_3334 glycine betaine ABC transporter substrate-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; SPTR: Substrate-binding region of ABC-type glycine betaine transport system; PFAM: Binding-protein-dependent transport system inner membrane component; Substrate binding domain of ABC-type glycine [...] (550 aa)    
Predicted Functional Partners:
Isop_3344
ABC transporter related protein; COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: hoh:Hoch_5204 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
 
 0.999
Isop_1003
Transcriptional regulator, ArsR family; KEGG: bbt:BBta_7857 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family.
  
  
 0.642
Isop_2512
InterPro IPR000835; KEGG: psl:Psta_1616 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Probable marR-family transcription regulator; PFAM: MarR family.
  
  
 0.642
Isop_1742
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR001638: IPR010065; KEGG: tai:Taci_0574 polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; SMART: extracellular solute-binding protein family 3; SPTR: Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent tra [...]
     
 0.622
Isop_0730
COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR005770; KEGG: cyb:CYB_0011 putative phosphonate ABC transporter, phosphonate-binding protein; SPTR: Putative phosphonate ABC transporter, phosphonate-binding protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein.
    
 0.520
Isop_3342
LemA family protein; COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: dol:Dole_1528 LemA family protein; PFAM: LemA family protein; SPTR: LemA family protein; PFAM: LemA family.
       0.485
Isop_3345
InterPro IPR004155; KEGG: rrs:RoseRS_1736 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
       0.480
Isop_1456
Methyltransferase; COGs: COG4301 conserved hypothetical protein; InterPro IPR017804: IPR019257; KEGG: npu:Npun_F2219 hypothetical protein; PFAM: Protein of unknown function DUF2260; SPTR: Putative uncharacterized protein; TIGRFAM: methyltransferase; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase.
 
     0.457
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
 
   
 0.450
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
 
  
 0.448
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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