STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3363COGs: COG0433 ATPase; InterPro IPR003593; KEGG: sat:SYN_01844 putative cytoplasmic protein; SMART: AAA ATPase; SPTR: Hypothetical cytosolic protein; PFAM: Domain of unknown function DUF87. (650 aa)    
Predicted Functional Partners:
Isop_3365
KEGG: pth:PTH_0156 hypothetical protein; SPTR: Hypothetical membrane protein.
 
     0.930
Isop_3364
NurA domain protein; InterPro IPR018977; KEGG: sat:SYN_01845 putative cytoplasmic protein; PFAM: NurA domain; SPTR: Hypothetical cytosolic protein; PFAM: NurA domain.
       0.782
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.574
Isop_3366
KEGG: scl:sce1944 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.498
Isop_2148
CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013410: IPR005537; KEGG: rce:RC1_3484 CRISPR-associated RAMP protein, putative; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, putative; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family.
  
     0.421
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.