STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3366KEGG: scl:sce1944 hypothetical protein; SPTR: Putative uncharacterized protein. (115 aa)    
Predicted Functional Partners:
Isop_1312
COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR017963: IPR001126; KEGG: psl:Psta_3727 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family.
    
   0.567
Isop_3365
KEGG: pth:PTH_0156 hypothetical protein; SPTR: Hypothetical membrane protein.
       0.550
Isop_3363
COGs: COG0433 ATPase; InterPro IPR003593; KEGG: sat:SYN_01844 putative cytoplasmic protein; SMART: AAA ATPase; SPTR: Hypothetical cytosolic protein; PFAM: Domain of unknown function DUF87.
       0.498
Isop_3364
NurA domain protein; InterPro IPR018977; KEGG: sat:SYN_01845 putative cytoplasmic protein; PFAM: NurA domain; SPTR: Hypothetical cytosolic protein; PFAM: NurA domain.
       0.498
Isop_2419
YD repeat protein; COGs: COG3209 Rhs family protein; InterPro IPR003587: IPR006530: IPR006141; KEGG: plm:Plim_1036 AmoP; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein; SPTR: AmoP; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
   
 
 0.483
Isop_0664
KEGG: cya:CYA_0440 hypothetical protein; SPTR: Putative uncharacterized protein.
   
  
 0.463
Isop_0549
KEGG: rba:RB10354 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.451
Isop_1550
Hypothetical protein; COGs: COG1196 Chromosome segregation ATPase; KEGG: lma:LmjF34.0690 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.451
Isop_1923
KEGG: psl:Psta_3786 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.451
Isop_2792
MJ0042 family finger-like protein; InterPro IPR019825: IPR011723; KEGG: lma:LmjF34.0690 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: MJ0042 family finger-like protein; TIGRFAM: MJ0042 family finger-like domain.
    
 
 0.451
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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