STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_3371Hypothetical protein; COGs: COG1483 ATPase (AAA+ superfamily); KEGG: sme:SMc02155 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF499). (959 aa)    
Predicted Functional Partners:
Isop_3374
Protein of unknown function DUF1156; COGs: COG1743 Adenine-specific DNA methylase containing a Zn-ribbon; InterPro IPR009537: IPR012327; KEGG: sme:SMc02154 hypothetical protein; PFAM: protein of unknown function DUF1156; D12 class N6 adenine-specific DNA methyltransferase; SPTR: Putative uncharacterized protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase; Transposase IS200 like; Protein of unknown function (DUF1156).
 
     0.956
Isop_3375
Helicase domain protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014021: IPR001650: IPR000330: IPR014001; KEGG: sme:SMc02152 putative helicase protein; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase; SPTR: Helicase-DNA-binding protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
     0.945
Isop_3372
KEGG: mar:MAE_40430 hypothetical protein; SPTR: Genome sequencing data, contig C279; PFAM: Protein of unknown function DUF82.
       0.762
Isop_3373
Protein of unknown function DUF433; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: cyc:PCC7424_3561 protein of unknown function DUF433; PFAM: protein of unknown function DUF433; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF433).
       0.762
Isop_0118
Hypothetical protein; KEGG: psl:Psta_0521 von Willebrand factor type A; SPTR: von Willebrand factor type A.
  
     0.556
Isop_2454
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
  
     0.499
Isop_1833
CRISPR-associated protein, GSU0054; InterPro IPR019089; KEGG: hoh:Hoch_4849 hypothetical protein; PFAM: CRISPR-associated protein, GSU0054; SPTR: Putative uncharacterized protein; PFAM: CRISPR-associated protein, GSU0054 family (Cas_GSU0054); TIGRFAM: CRISPR-associated protein, GSU0054 family.
  
     0.485
Isop_0604
phospholipase/Carboxylesterase; InterPro IPR003140; KEGG: sus:Acid_1148 putative esterase; PFAM: phospholipase/Carboxylesterase; SPTR: Putative esterase; PFAM: Phospholipase/Carboxylesterase.
  
     0.480
Isop_3370
KEGG: rba:RB940 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.421
Isop_1834
CRISPR-associated protein, Csx4 family; InterPro IPR013403; KEGG: hoh:Hoch_4848 CRISPR-associated protein GSU0053; PFAM: CRISPR-associated protein GSU0053; SPTR: CRISPR-associated protein GSU0053; PFAM: CRISPR-associated protein GSU0053 (Cas_GSU0053); TIGRFAM: CRISPR-associated protein, GSU0053 family, N-terminal domain.
  
     0.409
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.