STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3380InterPro IPR014284: IPR007627; KEGG: zpr:ZPR_2352 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 2 domain protein; SPTR: RNA polymerase sigma factor/ECF subfamily (Sigma-70); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (235 aa)    
Predicted Functional Partners:
Isop_2275
InterPro IPR001623; KEGG: tcu:Tcur_1396 fibronectin type III domain protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Fibronectin type III domain protein.
  
     0.764
Isop_1461
Hypothetical protein; KEGG: mca:MCA2974 PKD domain-containing protein; SPTR: PKD domain protein.
  
 
   0.759
Isop_2653
Hypothetical protein; COGs: COG3387 Glucoamylase and related glycosyl hydrolase; KEGG: tjr:TherJR_2725 glycoside hydrolase 15-related protein; SPTR: Glycoside hydrolase 15-related protein.
  
     0.752
Isop_0706
Protein of unknown function DUF1565; InterPro IPR011506: IPR000209: IPR011459: IPR006626; KEGG: mar:MAE_50880 hypothetical protein; PFAM: protein of unknown function DUF1565; Planctomycete extracellular domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase families S8 and S53 domain protein; PFAM: Protein of unknown function (DUF1565); Subtilase family.
  
 
   0.750
Isop_0835
Hypothetical protein; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: hau:Haur_0806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.750
Isop_2736
KEGG: mxa:MXAN_5625 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.749
Isop_1520
InterPro IPR019734: IPR013026: IPR001440; KEGG: dak:DaAHT2_1784 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
  
     0.748
Isop_2254
KEGG: aba:Acid345_4727 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.748
Isop_2824
Hypothetical protein; InterPro IPR001120: IPR012902; KEGG: plm:Plim_0405 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
     0.745
Isop_2388
KEGG: psl:Psta_2133 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.742
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.