Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3439Exo-beta-1 3-glucanase-like protein; COGs: COG5309 Exo-beta-1 3-glucanase; KEGG: pla:Plav_0507 exo-beta-1 3-glucanase-like protein; SPTR: Exo-beta-1 3-glucanase-like protein. (340 aa)    
Predicted Functional Partners:
Isop_3438
KEGG: plm:Plim_3927 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Isop_3437
KEGG: ure:UREG_02925 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.677
Isop_2421
KEGG: cre:CHLREDRAFT_149710 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Mannosyltransferase putative.
  
     0.469
Isop_2506
KEGG: plm:Plim_3939 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.415
Isop_3699
Sulphate transporter; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: plm:Plim_2933 sulphate transporter; PFAM: sulphate transporter; SPTR: Sulphate transporter; PFAM: Sulfate transporter family.
  
     0.407
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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