STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_3442Extracellular solute-binding protein family 1; COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006059; KEGG: rba:RB531 iron (III) transport system (iron (III)-binding protein); PFAM: extracellular solute-binding protein family 1; SPTR: Iron (III) transport system (Iron (III)-binding protein); PFAM: Bacterial extracellular solute-binding protein. (356 aa)    
Predicted Functional Partners:
Isop_3448
Hypothetical protein; COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: psl:Psta_3967 binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.981
Isop_3441
Protein of unknown function DUF1555; InterPro IPR013424: IPR011449; KEGG: ava:Ava_4160 VCBS; PFAM: protein of unknown function DUF1555; SPTR: VCBS; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM putative exosortase interaction domain.
       0.773
Isop_1347
Hypothetical protein; COGs: COG1178 ABC-type Fe3+ transport system permease component; KEGG: ttj:TTHA0716 molybdenum ABC transporter, permease protein; SPTR: Binding-protein-dependent transport systems inner membrane component.
  
  
 0.650
Isop_0549
KEGG: rba:RB10354 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.519
Isop_1870
KEGG: psl:Psta_4021 ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
     0.508
Isop_2745
InterPro IPR002035; KEGG: psl:Psta_2131 von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor type A; PFAM: Aerotolerance regulator N-terminal.
 
     0.507
Isop_3443
COGs: COG0515 Serine/threonine protein kinase; InterProIPR000719: IPR017442: IPR008271: IPR020635: IPR 002290; KEGG: rba:RB5593 serine/threonine-protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; SPTR: Serine/threonine-protein kinase; PFAM: Protein kinase domain.
       0.494
Isop_1346
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: bmr:BMI_II322 spermidine/putrescine ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.477
Isop_2740
Protein of unknown function DUF1355; InterPro IPR002035: IPR010768; KEGG: psl:Psta_2128 von Willebrand factor type A; PFAM: protein of unknown function DUF1355; von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor type A; PFAM: von Willebrand factor type A domain; Protein of unknown function (DUF1355).
 
     0.465
Isop_2008
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: rms:RMA_0089 sugar phosphate permease; PFAM: major facilitator superfamily MFS_1; SPTR: Glycerol-3-phosphate transporter; PFAM: Major Facilitator Superfamily.
  
    0.450
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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