STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3529AAA ATPase; InterPro IPR003593; KEGG: plm:Plim_3352 AAA ATPase; SMART: AAA ATPase; SPTR: Putative uncharacterized protein. (439 aa)    
Predicted Functional Partners:
Isop_0140
Type II secretion system F domain protein; COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: plm:Plim_1916 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
    0.760
Isop_0139
Type II secretion system F domain protein; COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: rba:RB5941 secretion system protein TadB; PFAM: Type II secretion system F domain; SPTR: Secretion system protein TadB; PFAM: Bacterial type II secretion system protein F domain.
 
    0.747
Isop_0137
Response regulator receiver; COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: plm:Plim_0793 response regulator receiver; SPTR: Response regulator receiver protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
    0.735
Isop_0138
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975: IPR001482; KEGG: plm:Plim_1918 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein.
 
     0.692
Isop_0072
Type II and III secretion system protein; COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR001775: IPR001814: IPR007055: IPR004846; KEGG: rba:RB13104 type II secretion system protein; PFAM: type II and III secretion system protein; transport-associated; SPTR: Probable type II secretion system protein; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.675
Isop_3714
COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: sfu:Sfum_1497 response regulator receiver protein; SPTR: Response regulator receiver protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
    0.615
Isop_3528
HI0933 family protein; COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: psl:Psta_0791 HI0933 family protein; PFAM: HI0933 family protein; SPTR: HI0933 family protein; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family.
       0.603
Isop_3530
Uncharacterized protein family UPF0079, ATPase; COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: avi:Avi_0051 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family.
  
    0.555
Isop_0135
Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: plm:Plim_0796 peptidase A24A prepilin type IV; PFAM: peptidase A24A prepilin type IV; SPTR: Peptidase A24A prepilin type IV; PFAM: Type IV leader peptidase family.
 
     0.518
Isop_3531
Histidine biosynthesis protein; COGs: COG1411 Uncharacterized protein related to proFAR isomerase (HisA); InterPro IPR006062; KEGG: vap:Vapar_3068 histidine biosynthesis protein; PFAM: histidine biosynthesis protein; SPTR: HisA/HisF family protein, putative; PFAM: Histidine biosynthesis protein.
       0.518
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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