STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3539KEGG: psl:Psta_2911 hypothetical protein; SPTR: Putative uncharacterized protein. (327 aa)    
Predicted Functional Partners:
Isop_3540
Hypothetical protein; KEGG: srm:SRM_02025 conserved hypothetical protein, membrane; SPTR: Putative uncharacterized protein.
       0.805
Isop_3538
Prenyltransferase/squalene oxidase; InterPro IPR001330; KEGG: psl:Psta_2910 hypothetical protein; PFAM: Prenyltransferase/squalene oxidase; SPTR: Putative uncharacterized protein.
       0.789
Isop_3537
InterPro IPR013222; KEGG: psl:Psta_2909 glycosyl hydrolase family 98 putative carbohydrate binding module; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; SPTR: Putative uncharacterized protein; PFAM: NPCBM/NEW2 domain.
       0.556
Isop_3541
InterPro IPR002035: IPR010768; KEGG: psl:Psta_2913 protein of unknown function DUF1355; PFAM: protein of unknown function DUF1355; von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: von Willebrand factor type A domain; Protein of unknown function (DUF1355).
       0.432
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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