STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3575COGs: COG0531 Amino acid transporter; InterPro IPR002293: IPR004841; KEGG: gau:GAU_2006 putative permease; PFAM: amino acid permease-associated region; SPTR: Putative permease; PFAM: Amino acid permease. (578 aa)    
Predicted Functional Partners:
Isop_3576
Methyltransferase FkbM family; InterPro IPR006342: IPR010916; KEGG: sco:SCO3866 hypothetical protein; SPTR: Mucin-2; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family.
       0.773
glgE
Glycosyl transferase group 1; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
    
 0.660
Isop_2050
Trehalose synthase; COGs: COG0366 Glycosidase; InterPro IPR006047: IPR006589: IPR012810; KEGG: mxa:MXAN_3684 trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Trehalose synthase; TIGRFAM: trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: trehalose synthase.
    
 0.644
Isop_3574
InterPro IPR000620; KEGG: plm:Plim_0609 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family.
     
 0.429
Isop_1147
Amino acid/peptide transporter; COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279: IPR000109: IPR018456; KEGG: xal:XALc_Yp01 hypothetical amino acid/peptide transporter protein; PFAM: TGF-beta receptor type I/II extracellular region; SPTR: Di-/tripeptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial.
  
 
 
 0.418
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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