Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3657KEGG: cag:Cagg_0822 hypothetical protein; SPTR: Putative uncharacterized protein. (479 aa)    
Predicted Functional Partners:
Isop_2134
KEGG: cma:Cmaq_1622 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.735
Isop_3032
KEGG: npu:Npun_R2871 hypothetical protein; SPTR: Phosphoribosylaminoimidazole synthetase.
  
     0.666
Isop_3614
Hypothetical protein; KEGG: rba:RB12630 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.591
Isop_1069
KEGG: fra:Francci3_2916 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2029).
  
     0.585
Isop_2558
InterPro IPR005079; KEGG: mbr:MONBRDRAFT_36634 hypothetical protein; PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: Putative uncharacterized protein; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.580
Isop_2339
Hypothetical protein; KEGG: rba:RB3324 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.573
Isop_1004
Hypothetical protein; InterPro IPR001588; KEGG: aba:Acid345_3138 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.569
Isop_3656
Protein of unknown function DUF1080; InterPro IPR010496; KEGG: psl:Psta_2956 membrane-bound dehydrogenase domain protein; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080).
       0.554
Isop_0444
COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: phe:Phep_0342 dipeptidyl aminopeptidase/acylaminoacyl-peptidase; SPTR: Putative uncharacterized protein; PFAM: Prolyl oligopeptidase family.
  
     0.543
Isop_0287
Amidohydrolase 2; COGs: COG1904 Glucuronate isomerase; KEGG: plm:Plim_2160 amidohydrolase 2; SPTR: Putative uncharacterized protein; PFAM: Glucuronate isomerase.
  
     0.537
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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