STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI16628.1Polysaccharide deacetylase. (267 aa)    
Predicted Functional Partners:
EFI16627.1
Conserved hypothetical protein.
 
     0.941
EFI16626.1
Conserved hypothetical protein.
 
     0.929
EFI16363.1
Hypothetical protein.
  
     0.760
EFI16867.1
Conserved hypothetical protein.
 
     0.742
EFI16629.1
Galactoside O-acetyltransferase.
       0.723
EFI16591.1
Conserved hypothetical protein.
  
     0.701
EFI16273.1
Hypothetical protein.
  
     0.692
EFI17004.1
Hypothetical protein.
  
     0.656
EFI16438.1
Group 2 family glycosyl transferase.
  
 
  0.603
EFI16633.1
Conserved hypothetical protein.
 
    0.596
Your Current Organism:
Bacteroidetes F0058
NCBI taxonomy Id: 575590
Other names: B. oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 strain F0058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.