STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI16666.1Hypothetical protein. (376 aa)    
Predicted Functional Partners:
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.845
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.832
EFI16111.1
Conserved hypothetical protein.
   
 0.826
EFI16899.1
Conserved hypothetical protein.
  
 0.824
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.809
EFI17221.1
Serine/threonine kinase.
   
  0.804
EFI16207.1
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.788
EFI16773.1
Ankyrin repeat protein.
   
  0.741
EFI16830.1
Tankyrase-1 (TANK1) (Tankyrase I) (TNKS-1) (TRF1-interacting ankyrin-related ADP-ribose polymerase).
   
  0.741
EFI17302.1
Ankyrin repeat protein.
   
  0.741
Your Current Organism:
Bacteroidetes F0058
NCBI taxonomy Id: 575590
Other names: B. oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 strain F0058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.