STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI16797.1Conserved hypothetical protein. (225 aa)    
Predicted Functional Partners:
EFI17045.1
Conserved hypothetical protein.
  
    0.758
EFI16207.1
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.720
EFI17168.1
Conserved hypothetical protein.
  
     0.717
EFI16796.1
spoOJ protein; Belongs to the ParB family.
       0.710
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.692
EFI16798.1
Membrane-bound lytic murein transglycosylase D.
 
    0.688
EFI17572.1
Conserved hypothetical protein.
  
     0.684
EFI17674.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.672
EFI16284.1
Outer membrane protein.
  
     0.667
EFI16989.1
Membrane protein.
  
     0.665
Your Current Organism:
Bacteroidetes F0058
NCBI taxonomy Id: 575590
Other names: B. oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 strain F0058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.