STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI17284.1Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)    
Predicted Functional Partners:
EFI16038.1
Glycine dehydrogenase; Belongs to the GcvP family.
 
      0.765
EFI17638.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
  0.664
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.659
EFI16414.1
Malonyl CoA-acyl carrier protein transacylase.
    
 0.569
EFI16291.1
NADP-dependent alcohol dehydrogenase (CbADH).
    
 0.565
EFI16063.1
Pyruvate synthase.
   
 
  0.529
EFI17439.1
Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.519
EFI16665.1
Epimerase/reductase.
   
 
  0.499
EFI17285.1
Carboxyl- protease-related protein.
       0.497
EFI17286.1
Hypothetical protein.
       0.497
Your Current Organism:
Bacteroidetes F0058
NCBI taxonomy Id: 575590
Other names: B. oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 str. F0058, Bacteroidetes oral taxon 274 strain F0058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.