Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFI15874.1 | EFI16227.1 | HMPREF0156_01322 | HMPREF0156_01677 | Glycerol-3-phosphate cytidylyltransferase. | Teichoic acid biosynthesis protein F. | 0.811 |
EFI16226.1 | EFI16227.1 | HMPREF0156_01676 | HMPREF0156_01677 | Trigger factor. | Teichoic acid biosynthesis protein F. | 0.443 |
EFI16226.1 | EFI16230.1 | HMPREF0156_01676 | HMPREF0156_01680 | Trigger factor. | Conserved hypothetical protein. | 0.494 |
EFI16226.1 | yidC | HMPREF0156_01676 | HMPREF0156_01526 | Trigger factor. | Inner membrane protein OxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.466 |
EFI16227.1 | EFI15874.1 | HMPREF0156_01677 | HMPREF0156_01322 | Teichoic acid biosynthesis protein F. | Glycerol-3-phosphate cytidylyltransferase. | 0.811 |
EFI16227.1 | EFI16226.1 | HMPREF0156_01677 | HMPREF0156_01676 | Teichoic acid biosynthesis protein F. | Trigger factor. | 0.443 |
EFI16227.1 | EFI16228.1 | HMPREF0156_01677 | HMPREF0156_01678 | Teichoic acid biosynthesis protein F. | endonuclease/Exonuclease/phosphatase family protein. | 0.594 |
EFI16227.1 | EFI16229.1 | HMPREF0156_01677 | HMPREF0156_01679 | Teichoic acid biosynthesis protein F. | Conserved hypothetical protein. | 0.558 |
EFI16227.1 | EFI16230.1 | HMPREF0156_01677 | HMPREF0156_01680 | Teichoic acid biosynthesis protein F. | Conserved hypothetical protein. | 0.471 |
EFI16227.1 | ffh | HMPREF0156_01677 | HMPREF0156_01286 | Teichoic acid biosynthesis protein F. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.533 |
EFI16227.1 | yidC | HMPREF0156_01677 | HMPREF0156_01526 | Teichoic acid biosynthesis protein F. | Inner membrane protein OxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.518 |
EFI16228.1 | EFI16227.1 | HMPREF0156_01678 | HMPREF0156_01677 | endonuclease/Exonuclease/phosphatase family protein. | Teichoic acid biosynthesis protein F. | 0.594 |
EFI16228.1 | EFI16229.1 | HMPREF0156_01678 | HMPREF0156_01679 | endonuclease/Exonuclease/phosphatase family protein. | Conserved hypothetical protein. | 0.723 |
EFI16228.1 | EFI16230.1 | HMPREF0156_01678 | HMPREF0156_01680 | endonuclease/Exonuclease/phosphatase family protein. | Conserved hypothetical protein. | 0.602 |
EFI16229.1 | EFI16227.1 | HMPREF0156_01679 | HMPREF0156_01677 | Conserved hypothetical protein. | Teichoic acid biosynthesis protein F. | 0.558 |
EFI16229.1 | EFI16228.1 | HMPREF0156_01679 | HMPREF0156_01678 | Conserved hypothetical protein. | endonuclease/Exonuclease/phosphatase family protein. | 0.723 |
EFI16229.1 | EFI16230.1 | HMPREF0156_01679 | HMPREF0156_01680 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.642 |
EFI16230.1 | EFI16226.1 | HMPREF0156_01680 | HMPREF0156_01676 | Conserved hypothetical protein. | Trigger factor. | 0.494 |
EFI16230.1 | EFI16227.1 | HMPREF0156_01680 | HMPREF0156_01677 | Conserved hypothetical protein. | Teichoic acid biosynthesis protein F. | 0.471 |
EFI16230.1 | EFI16228.1 | HMPREF0156_01680 | HMPREF0156_01678 | Conserved hypothetical protein. | endonuclease/Exonuclease/phosphatase family protein. | 0.602 |
page 1 of 2