STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGG90675.1Hypothetical protein. (229 aa)    
Predicted Functional Partners:
EGG90676.1
Hypothetical protein.
  
  
 0.996
EGG92031.1
Hypothetical protein.
  
  
 0.965
EGG91779.1
Hypothetical protein.
       0.674
EGG91613.1
Hypothetical protein.
   
  
 0.484
EGG92674.1
Hypothetical protein.
   
  
 0.484
EGG92675.1
Hypothetical protein.
   
  
 0.484
EGG92676.1
Hypothetical protein.
   
  
 0.484
EGG92136.1
Hypothetical protein.
       0.482
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
      
 0.444
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.420
Your Current Organism:
Lachnospiraceae F0167
NCBI taxonomy Id: 575593
Other names: L. oral taxon 107 str. F0167, Lachnospiraceae oral taxon 107 str. F0167, Lachnospiraceae oral taxon 107 strain F0167
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.