Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGG89726.1 | EGG89728.1 | HMPREF0491_00856 | HMPREF0491_00858 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein. | 0.992 |
EGG89726.1 | EGG89731.1 | HMPREF0491_00856 | HMPREF0491_00861 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein. | 0.993 |
EGG89726.1 | EGG89732.1 | HMPREF0491_00856 | HMPREF0491_00862 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein. | 0.993 |
EGG89726.1 | EGG90810.1 | HMPREF0491_00856 | HMPREF0491_02666 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.985 |
EGG89726.1 | infB | HMPREF0491_00856 | HMPREF0491_00860 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.993 |
EGG89726.1 | nusA | HMPREF0491_00856 | HMPREF0491_00863 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.993 |
EGG89726.1 | rbfA | HMPREF0491_00856 | HMPREF0491_00859 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.997 |
EGG89726.1 | rimP | HMPREF0491_00856 | HMPREF0491_00864 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.991 |
EGG89726.1 | rpsO | HMPREF0491_00856 | HMPREF0491_00444 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.985 |
EGG89726.1 | truB | HMPREF0491_00856 | HMPREF0491_00857 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.998 |
EGG89728.1 | EGG89726.1 | HMPREF0491_00858 | HMPREF0491_00856 | Hypothetical protein. | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 0.992 |
EGG89728.1 | EGG89731.1 | HMPREF0491_00858 | HMPREF0491_00861 | Hypothetical protein. | Hypothetical protein. | 0.992 |
EGG89728.1 | EGG89732.1 | HMPREF0491_00858 | HMPREF0491_00862 | Hypothetical protein. | Hypothetical protein. | 0.994 |
EGG89728.1 | EGG90810.1 | HMPREF0491_00858 | HMPREF0491_02666 | Hypothetical protein. | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.971 |
EGG89728.1 | infB | HMPREF0491_00858 | HMPREF0491_00860 | Hypothetical protein. | Hypothetical protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.997 |
EGG89728.1 | nusA | HMPREF0491_00858 | HMPREF0491_00863 | Hypothetical protein. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.992 |
EGG89728.1 | rbfA | HMPREF0491_00858 | HMPREF0491_00859 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.998 |
EGG89728.1 | rimP | HMPREF0491_00858 | HMPREF0491_00864 | Hypothetical protein. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.991 |
EGG89728.1 | rpsO | HMPREF0491_00858 | HMPREF0491_00444 | Hypothetical protein. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.955 |
EGG89728.1 | truB | HMPREF0491_00858 | HMPREF0491_00857 | Hypothetical protein. | Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.996 |
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