Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGG89763.1 | EGG89764.1 | HMPREF0491_00893 | HMPREF0491_00894 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.994 |
EGG89763.1 | EGG89765.1 | HMPREF0491_00893 | HMPREF0491_00895 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.993 |
EGG89763.1 | EGG89766.1 | HMPREF0491_00893 | HMPREF0491_00896 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.993 |
EGG89763.1 | EGG89767.1 | HMPREF0491_00893 | HMPREF0491_00897 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.975 |
EGG89763.1 | EGG89768.1 | HMPREF0491_00893 | HMPREF0491_00898 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.603 |
EGG89763.1 | EGG89769.1 | HMPREF0491_00893 | HMPREF0491_00899 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.860 |
EGG89763.1 | EGG89771.1 | HMPREF0491_00893 | HMPREF0491_00901 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.794 |
EGG89763.1 | EGG89772.1 | HMPREF0491_00893 | HMPREF0491_00902 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.888 |
EGG89763.1 | EGG89773.1 | HMPREF0491_00893 | HMPREF0491_00903 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.700 |
EGG89763.1 | nth | HMPREF0491_00893 | HMPREF0491_00900 | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.967 |
EGG89764.1 | EGG89763.1 | HMPREF0491_00894 | HMPREF0491_00893 | Hypothetical protein. | Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.994 |
EGG89764.1 | EGG89765.1 | HMPREF0491_00894 | HMPREF0491_00895 | Hypothetical protein. | Hypothetical protein. | 0.999 |
EGG89764.1 | EGG89766.1 | HMPREF0491_00894 | HMPREF0491_00896 | Hypothetical protein. | Hypothetical protein. | 0.993 |
EGG89764.1 | EGG89767.1 | HMPREF0491_00894 | HMPREF0491_00897 | Hypothetical protein. | Hypothetical protein. | 0.969 |
EGG89764.1 | EGG89768.1 | HMPREF0491_00894 | HMPREF0491_00898 | Hypothetical protein. | Hypothetical protein. | 0.603 |
EGG89764.1 | EGG89769.1 | HMPREF0491_00894 | HMPREF0491_00899 | Hypothetical protein. | Hypothetical protein. | 0.833 |
EGG89764.1 | EGG89771.1 | HMPREF0491_00894 | HMPREF0491_00901 | Hypothetical protein. | Hypothetical protein. | 0.837 |
EGG89764.1 | EGG89772.1 | HMPREF0491_00894 | HMPREF0491_00902 | Hypothetical protein. | Hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.811 |
EGG89764.1 | EGG89773.1 | HMPREF0491_00894 | HMPREF0491_00903 | Hypothetical protein. | Hypothetical protein. | 0.569 |
EGG89764.1 | nth | HMPREF0491_00894 | HMPREF0491_00900 | Hypothetical protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.914 |
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