Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGG86654.1 | EGG88858.1 | HMPREF0491_01114 | HMPREF0491_03006 | Hypothetical protein. | Hypothetical protein. | 0.741 |
EGG86654.1 | EGG91768.1 | HMPREF0491_01114 | HMPREF0491_01895 | Hypothetical protein. | Hypothetical protein. | 0.698 |
EGG86654.1 | EGG92190.1 | HMPREF0491_01114 | HMPREF0491_00217 | Hypothetical protein. | Pyruvate:ferredoxin oxidoreductase. | 0.997 |
EGG86654.1 | EGG92412.1 | HMPREF0491_01114 | HMPREF0491_01367 | Hypothetical protein. | Hypothetical protein. | 0.741 |
EGG86654.1 | EGG92440.1 | HMPREF0491_01114 | HMPREF0491_01395 | Hypothetical protein. | Hypothetical protein. | 0.944 |
EGG86654.1 | accD | HMPREF0491_01114 | HMPREF0491_02199 | Hypothetical protein. | Hypothetical protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.406 |
EGG86654.1 | polA | HMPREF0491_01114 | HMPREF0491_02126 | Hypothetical protein. | Hypothetical protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.994 |
EGG86654.1 | ruvA | HMPREF0491_01114 | HMPREF0491_00726 | Hypothetical protein. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.876 |
EGG86654.1 | topA | HMPREF0491_01114 | HMPREF0491_00424 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.939 |
EGG88858.1 | EGG86654.1 | HMPREF0491_03006 | HMPREF0491_01114 | Hypothetical protein. | Hypothetical protein. | 0.741 |
EGG88858.1 | EGG91424.1 | HMPREF0491_03006 | HMPREF0491_02189 | Hypothetical protein. | Hypothetical protein. | 0.557 |
EGG88858.1 | EGG91768.1 | HMPREF0491_03006 | HMPREF0491_01895 | Hypothetical protein. | Hypothetical protein. | 0.850 |
EGG88858.1 | EGG92190.1 | HMPREF0491_03006 | HMPREF0491_00217 | Hypothetical protein. | Pyruvate:ferredoxin oxidoreductase. | 0.982 |
EGG88858.1 | EGG92412.1 | HMPREF0491_03006 | HMPREF0491_01367 | Hypothetical protein. | Hypothetical protein. | 0.885 |
EGG88858.1 | EGG92440.1 | HMPREF0491_03006 | HMPREF0491_01395 | Hypothetical protein. | Hypothetical protein. | 0.903 |
EGG88858.1 | accD | HMPREF0491_03006 | HMPREF0491_02199 | Hypothetical protein. | Hypothetical protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.931 |
EGG88858.1 | polA | HMPREF0491_03006 | HMPREF0491_02126 | Hypothetical protein. | Hypothetical protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.962 |
EGG88858.1 | ruvA | HMPREF0491_03006 | HMPREF0491_00726 | Hypothetical protein. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.543 |
EGG88858.1 | topA | HMPREF0491_03006 | HMPREF0491_00424 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.943 |
EGG91424.1 | EGG88858.1 | HMPREF0491_02189 | HMPREF0491_03006 | Hypothetical protein. | Hypothetical protein. | 0.557 |
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