STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGG92218.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
EGG92217.1
Hypothetical protein.
 
 
 0.998
EGG92219.1
Hypothetical protein.
 
   
 0.985
EGG90556.1
Hypothetical protein.
 
 
 0.982
EGG91540.1
Hypothetical protein.
 
 
 0.981
EGG92770.1
Hypothetical protein.
 
 
 0.977
EGG92581.1
Hypothetical protein.
 
 
 0.971
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
 
 0.969
EGG91218.1
Hypothetical protein.
  
  
 0.968
EGG92221.1
Hypothetical protein.
 
   
 0.968
EGG90584.1
Hypothetical protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
  
 
 0.964
Your Current Organism:
Lachnospiraceae F0167
NCBI taxonomy Id: 575593
Other names: L. oral taxon 107 str. F0167, Lachnospiraceae oral taxon 107 str. F0167, Lachnospiraceae oral taxon 107 strain F0167
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