Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGG90809.1 | EGG90810.1 | HMPREF0491_02665 | HMPREF0491_02666 | Hypothetical protein. | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.993 |
EGG90809.1 | EGG90813.1 | HMPREF0491_02665 | HMPREF0491_02669 | Hypothetical protein. | Hypothetical protein. | 0.991 |
EGG90809.1 | EGG90816.1 | HMPREF0491_02665 | HMPREF0491_02672 | Hypothetical protein. | Thiamine pyrophosphokinase. | 0.990 |
EGG90809.1 | EGG91090.1 | HMPREF0491_02665 | HMPREF0491_02440 | Hypothetical protein. | Hypothetical protein. | 0.596 |
EGG90809.1 | EGG91655.1 | HMPREF0491_02665 | HMPREF0491_01992 | Hypothetical protein. | Hypothetical protein. | 0.881 |
EGG90809.1 | EGG92731.1 | HMPREF0491_02665 | HMPREF0491_00028 | Hypothetical protein. | Hypothetical protein. | 0.812 |
EGG90809.1 | rlmN | HMPREF0491_02665 | HMPREF0491_02667 | Hypothetical protein. | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.993 |
EGG90809.1 | rsgA | HMPREF0491_02665 | HMPREF0491_02670 | Hypothetical protein. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.991 |
EGG90810.1 | EGG90809.1 | HMPREF0491_02666 | HMPREF0491_02665 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.993 |
EGG90810.1 | EGG90813.1 | HMPREF0491_02666 | HMPREF0491_02669 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.994 |
EGG90810.1 | EGG90816.1 | HMPREF0491_02666 | HMPREF0491_02672 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Thiamine pyrophosphokinase. | 0.994 |
EGG90810.1 | EGG91090.1 | HMPREF0491_02666 | HMPREF0491_02440 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.596 |
EGG90810.1 | EGG91091.1 | HMPREF0491_02666 | HMPREF0491_02441 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.719 |
EGG90810.1 | EGG91655.1 | HMPREF0491_02666 | HMPREF0491_01992 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.944 |
EGG90810.1 | EGG92731.1 | HMPREF0491_02666 | HMPREF0491_00028 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.973 |
EGG90810.1 | rlmN | HMPREF0491_02666 | HMPREF0491_02667 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.999 |
EGG90810.1 | rsgA | HMPREF0491_02666 | HMPREF0491_02670 | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.996 |
EGG90813.1 | EGG90809.1 | HMPREF0491_02669 | HMPREF0491_02665 | Hypothetical protein. | Hypothetical protein. | 0.991 |
EGG90813.1 | EGG90810.1 | HMPREF0491_02669 | HMPREF0491_02666 | Hypothetical protein. | Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.994 |
EGG90813.1 | EGG90816.1 | HMPREF0491_02669 | HMPREF0491_02672 | Hypothetical protein. | Thiamine pyrophosphokinase. | 0.995 |
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