Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGG90857.1 | EGG90964.1 | HMPREF0491_02620 | HMPREF0491_02486 | Hypothetical protein. | Hypothetical protein. | 0.953 |
EGG90857.1 | rplB | HMPREF0491_02620 | HMPREF0491_02466 | Hypothetical protein. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.947 |
EGG90857.1 | rplC | HMPREF0491_02620 | HMPREF0491_02463 | Hypothetical protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.945 |
EGG90857.1 | rplE | HMPREF0491_02620 | HMPREF0491_02475 | Hypothetical protein. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.950 |
EGG90857.1 | rplN | HMPREF0491_02620 | HMPREF0491_02473 | Hypothetical protein. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.952 |
EGG90857.1 | rplV | HMPREF0491_02620 | HMPREF0491_02468 | Hypothetical protein. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.953 |
EGG90857.1 | rplW | HMPREF0491_02620 | HMPREF0491_02465 | Hypothetical protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.947 |
EGG90857.1 | rplX | HMPREF0491_02620 | HMPREF0491_02474 | Hypothetical protein. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.952 |
EGG90857.1 | rpmC | HMPREF0491_02620 | HMPREF0491_02471 | Hypothetical protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.946 |
EGG90857.1 | rpsQ | HMPREF0491_02620 | HMPREF0491_02472 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.945 |
EGG90964.1 | EGG90857.1 | HMPREF0491_02486 | HMPREF0491_02620 | Hypothetical protein. | Hypothetical protein. | 0.953 |
EGG90964.1 | rplB | HMPREF0491_02486 | HMPREF0491_02466 | Hypothetical protein. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |
EGG90964.1 | rplC | HMPREF0491_02486 | HMPREF0491_02463 | Hypothetical protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
EGG90964.1 | rplE | HMPREF0491_02486 | HMPREF0491_02475 | Hypothetical protein. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
EGG90964.1 | rplN | HMPREF0491_02486 | HMPREF0491_02473 | Hypothetical protein. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
EGG90964.1 | rplV | HMPREF0491_02486 | HMPREF0491_02468 | Hypothetical protein. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
EGG90964.1 | rplW | HMPREF0491_02486 | HMPREF0491_02465 | Hypothetical protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
EGG90964.1 | rplX | HMPREF0491_02486 | HMPREF0491_02474 | Hypothetical protein. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
EGG90964.1 | rpmC | HMPREF0491_02486 | HMPREF0491_02471 | Hypothetical protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
EGG90964.1 | rpsQ | HMPREF0491_02486 | HMPREF0491_02472 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
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