STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide ABC transporter, ATP-binding protein OppD; Truncated CDS; Belongs to the ABC transporter superfamily. (352 aa)    
Predicted Functional Partners:
EEU30841.1
Putative oligopeptide ABC transporter, permease protein OppC.
 
 0.999
EEU30842.1
Putative oligopeptide transport system permease protein OppB.
 0.999
EEU30843.1
ABC transporter, substrate-binding protein, family 5.
 
 0.998
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.905
EEU30303.1
ABC transporter, ATP-binding protein.
  
 
0.881
EEU30838.1
Amidohydrolase family protein.
       0.631
EEU30839.1
Peptidase, S9A/B/C family, catalytic domain protein.
      0.624
EEU30837.1
Peptidase dimerization domain protein.
     
 0.607
EEU30015.1
Putative arginine ABC transporter, permease protein ArtQ.
    
 0.473
EEU30341.1
Proline-specific peptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
      0.438
Your Current Organism:
Lactobacillus coleohominis
NCBI taxonomy Id: 575594
Other names: L. coleohominis 101-4-CHN, Lactobacillus coleohominis 101-4-CHN
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.