STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEU30852.1DNA/RNA non-specific endonuclease. (284 aa)    
Predicted Functional Partners:
EEU30331.1
DHHA1 domain protein.
  
     0.741
EEU30845.1
Hypothetical protein.
 
     0.622
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.593
EEU29726.1
Hypothetical protein.
  
     0.583
EEU30065.1
Hypothetical protein.
  
     0.526
EEU30917.1
Ser/Thr phosphatase family protein.
 
     0.512
EEU30170.1
Hypothetical protein.
 
     0.507
EEU30853.1
Putative proline-specific permease ProY.
       0.505
EEU30646.1
DNA internalization competence protein ComEC/Rec2-like protein.
     
 0.489
EEU30357.1
Penicillin-binding protein, transpeptidase domain protein.
 
     0.467
Your Current Organism:
Lactobacillus coleohominis
NCBI taxonomy Id: 575594
Other names: L. coleohominis 101-4-CHN, Lactobacillus coleohominis 101-4-CHN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.