EEU30477.1 protein (Lactobacillus coleohominis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EEU30477.1

Resolvase, N-terminal domain protein. (436 aa)

Predicted Functional Partners:

EEU30488.1

0.706

EEU30496.1

0.701

EEU30490.1

0.663

EEU30478.1

0.571

EEU30489.1

0.561

EEU30500.1

0.552

EEU30495.1

0.548

EEU30480.1

0.501

Your Current Organism:

Lactobacillus coleohominis

NCBI taxonomy Id: 575594
Other names: L. coleohominis 101-4-CHN, Lactobacillus coleohominis 101-4-CHN

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEU30477.1	EEU30478.1	HMPREF0501_00855	HMPREF0501_00856	Resolvase, N-terminal domain protein.	Resolvase, N-terminal domain protein.	0.571
EEU30477.1	EEU30480.1	HMPREF0501_00855	HMPREF0501_00858	Resolvase, N-terminal domain protein.	Toxin secretion/phage lysis holin.	0.501
EEU30477.1	EEU30488.1	HMPREF0501_00855	HMPREF0501_00866	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.706
EEU30477.1	EEU30489.1	HMPREF0501_00855	HMPREF0501_00867	Resolvase, N-terminal domain protein.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.561
EEU30477.1	EEU30490.1	HMPREF0501_00855	HMPREF0501_00868	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.663
EEU30477.1	EEU30495.1	HMPREF0501_00855	HMPREF0501_00873	Resolvase, N-terminal domain protein.	Phage/plasmid primase, P4 family domain protein.	0.548
EEU30477.1	EEU30496.1	HMPREF0501_00855	HMPREF0501_00874	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.701
EEU30477.1	EEU30500.1	HMPREF0501_00855	HMPREF0501_00878	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.552
EEU30478.1	EEU30477.1	HMPREF0501_00856	HMPREF0501_00855	Resolvase, N-terminal domain protein.	Resolvase, N-terminal domain protein.	0.571
EEU30478.1	EEU30480.1	HMPREF0501_00856	HMPREF0501_00858	Resolvase, N-terminal domain protein.	Toxin secretion/phage lysis holin.	0.527
EEU30478.1	EEU30488.1	HMPREF0501_00856	HMPREF0501_00866	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.758
EEU30478.1	EEU30489.1	HMPREF0501_00856	HMPREF0501_00867	Resolvase, N-terminal domain protein.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.597
EEU30478.1	EEU30490.1	HMPREF0501_00856	HMPREF0501_00868	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.624
EEU30478.1	EEU30495.1	HMPREF0501_00856	HMPREF0501_00873	Resolvase, N-terminal domain protein.	Phage/plasmid primase, P4 family domain protein.	0.487
EEU30478.1	EEU30496.1	HMPREF0501_00856	HMPREF0501_00874	Resolvase, N-terminal domain protein.	Hypothetical protein.	0.672
EEU30480.1	EEU30477.1	HMPREF0501_00858	HMPREF0501_00855	Toxin secretion/phage lysis holin.	Resolvase, N-terminal domain protein.	0.501
EEU30480.1	EEU30478.1	HMPREF0501_00858	HMPREF0501_00856	Toxin secretion/phage lysis holin.	Resolvase, N-terminal domain protein.	0.527
EEU30480.1	EEU30488.1	HMPREF0501_00858	HMPREF0501_00866	Toxin secretion/phage lysis holin.	Hypothetical protein.	0.761
EEU30480.1	EEU30489.1	HMPREF0501_00858	HMPREF0501_00867	Toxin secretion/phage lysis holin.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.515
EEU30480.1	EEU30490.1	HMPREF0501_00858	HMPREF0501_00868	Toxin secretion/phage lysis holin.	Hypothetical protein.	0.760