STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEU29679.1DNA-binding helix-turn-helix protein. (211 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
    
 0.870
EEU31091.1
DNA-binding helix-turn-helix protein.
 
   
 0.673
EEU29878.1
Response regulator receiver domain protein.
   
 0.537
EEU30697.1
Hypothetical protein.
  
     0.510
EEU29680.1
Macro domain protein.
       0.486
EEU30580.1
Hypothetical protein.
 
     0.484
EEU29840.1
LytTr DNA-binding domain protein.
 
   
 0.416
EEU31110.1
Gram-positive signal peptide protein, YSIRK family.
  
     0.401
pepO
Neprilysin.
       0.400
Your Current Organism:
Lactobacillus coleohominis
NCBI taxonomy Id: 575594
Other names: L. coleohominis 101-4-CHN, Lactobacillus coleohominis 101-4-CHN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.