STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEU29762.1Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase. (1253 aa)    
Predicted Functional Partners:
addA
ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
 
 0.999
EEU29765.1
Glycerophosphodiester phosphodiesterase family protein.
       0.716
yvgN-2
Glyoxal reductase.
       0.714
recJ
single-stranded-DNA-specific exonuclease RecJ.
     
 0.701
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.492
EEU30779.1
Hypothetical protein.
 
     0.488
EEU30969.1
Hypothetical protein.
 
     0.468
EEU30967.1
DnaD domain protein.
 
     0.460
dinG
Putative DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
 
   
 0.459
EEU31184.1
Polysaccharide biosynthesis protein.
  
     0.449
Your Current Organism:
Lactobacillus coleohominis
NCBI taxonomy Id: 575594
Other names: L. coleohominis 101-4-CHN, Lactobacillus coleohominis 101-4-CHN
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