Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFI41348.1 | EFI41660.1 | HMPREF0629_01406 | HMPREF0629_00283 | HTH domain protein. | Aminotransferase, class I/II; Transaminase A; AspAT. | 0.627 |
EFI41348.1 | EFI42494.1 | HMPREF0629_01406 | HMPREF0629_01147 | HTH domain protein. | Putative GMP synthase (glutamine-hydrolyzing) domain protein. | 0.941 |
EFI41348.1 | birA | HMPREF0629_01406 | HMPREF0629_00582 | HTH domain protein. | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.943 |
EFI41348.1 | guaA | HMPREF0629_01406 | HMPREF0629_00736 | HTH domain protein. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.941 |
EFI41348.1 | megL | HMPREF0629_01406 | HMPREF0629_00228 | HTH domain protein. | Methionine gamma-lyase. | 0.458 |
EFI41348.1 | metK | HMPREF0629_01406 | HMPREF0629_00408 | HTH domain protein. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.672 |
EFI41348.1 | msrB | HMPREF0629_01406 | HMPREF0629_00281 | HTH domain protein. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.625 |
EFI41348.1 | purD | HMPREF0629_01406 | HMPREF0629_00479 | HTH domain protein. | Phosphoribosylformylglycinamidine synthase; Belongs to the GARS family. | 0.624 |
EFI41348.1 | pyrG | HMPREF0629_01406 | HMPREF0629_00671 | HTH domain protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.473 |
EFI41660.1 | EFI41348.1 | HMPREF0629_00283 | HMPREF0629_01406 | Aminotransferase, class I/II; Transaminase A; AspAT. | HTH domain protein. | 0.627 |
EFI41660.1 | EFI42494.1 | HMPREF0629_00283 | HMPREF0629_01147 | Aminotransferase, class I/II; Transaminase A; AspAT. | Putative GMP synthase (glutamine-hydrolyzing) domain protein. | 0.481 |
EFI41660.1 | guaA | HMPREF0629_00283 | HMPREF0629_00736 | Aminotransferase, class I/II; Transaminase A; AspAT. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.413 |
EFI41660.1 | megL | HMPREF0629_00283 | HMPREF0629_00228 | Aminotransferase, class I/II; Transaminase A; AspAT. | Methionine gamma-lyase. | 0.695 |
EFI41660.1 | metK | HMPREF0629_00283 | HMPREF0629_00408 | Aminotransferase, class I/II; Transaminase A; AspAT. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.852 |
EFI41660.1 | msrB | HMPREF0629_00283 | HMPREF0629_00281 | Aminotransferase, class I/II; Transaminase A; AspAT. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.578 |
EFI41660.1 | purD | HMPREF0629_00283 | HMPREF0629_00479 | Aminotransferase, class I/II; Transaminase A; AspAT. | Phosphoribosylformylglycinamidine synthase; Belongs to the GARS family. | 0.558 |
EFI41660.1 | purF | HMPREF0629_00283 | HMPREF0629_00475 | Aminotransferase, class I/II; Transaminase A; AspAT. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.554 |
EFI42494.1 | EFI41348.1 | HMPREF0629_01147 | HMPREF0629_01406 | Putative GMP synthase (glutamine-hydrolyzing) domain protein. | HTH domain protein. | 0.941 |
EFI42494.1 | EFI41660.1 | HMPREF0629_01147 | HMPREF0629_00283 | Putative GMP synthase (glutamine-hydrolyzing) domain protein. | Aminotransferase, class I/II; Transaminase A; AspAT. | 0.481 |
EFI42494.1 | birA | HMPREF0629_01147 | HMPREF0629_00582 | Putative GMP synthase (glutamine-hydrolyzing) domain protein. | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.700 |
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