Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFI41342.1 | EFI41344.1 | HMPREF0629_01400 | HMPREF0629_01402 | Putative transcriptional regulator CtsR. | ATP:guanido phosphotransferase, C-terminal catalytic domain protein. | 0.974 |
EFI41342.1 | clpB | HMPREF0629_01400 | HMPREF0629_00457 | Putative transcriptional regulator CtsR. | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | 0.685 |
EFI41344.1 | EFI41342.1 | HMPREF0629_01402 | HMPREF0629_01400 | ATP:guanido phosphotransferase, C-terminal catalytic domain protein. | Putative transcriptional regulator CtsR. | 0.974 |
EFI41344.1 | clpB | HMPREF0629_01402 | HMPREF0629_00457 | ATP:guanido phosphotransferase, C-terminal catalytic domain protein. | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | 0.782 |
EFI41507.1 | clpB | HMPREF0629_00129 | HMPREF0629_00457 | DnaJ domain protein. | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | 0.767 |
EFI41507.1 | clpP | HMPREF0629_00129 | HMPREF0629_00194 | DnaJ domain protein. | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.513 |
EFI41507.1 | dnaK | HMPREF0629_00129 | HMPREF0629_01042 | DnaJ domain protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.998 |
EFI41507.1 | groS | HMPREF0629_00129 | HMPREF0629_00538 | DnaJ domain protein. | Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.691 |
EFI41507.1 | grpE | HMPREF0629_00129 | HMPREF0629_01043 | DnaJ domain protein. | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] | 0.921 |
EFI41507.1 | lon | HMPREF0629_00129 | HMPREF0629_00192 | DnaJ domain protein. | Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.629 |
EFI41828.1 | clpB | HMPREF0629_00456 | HMPREF0629_00457 | DnaJ domain protein. | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | 0.945 |
EFI41828.1 | clpP | HMPREF0629_00456 | HMPREF0629_00194 | DnaJ domain protein. | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.526 |
EFI41828.1 | dnaK | HMPREF0629_00456 | HMPREF0629_01042 | DnaJ domain protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |
EFI41828.1 | groS | HMPREF0629_00456 | HMPREF0629_00538 | DnaJ domain protein. | Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.700 |
EFI41828.1 | grpE | HMPREF0629_00456 | HMPREF0629_01043 | DnaJ domain protein. | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] | 0.953 |
EFI41828.1 | lon | HMPREF0629_00456 | HMPREF0629_00192 | DnaJ domain protein. | Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.629 |
clpB | EFI41342.1 | HMPREF0629_00457 | HMPREF0629_01400 | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | Putative transcriptional regulator CtsR. | 0.685 |
clpB | EFI41344.1 | HMPREF0629_00457 | HMPREF0629_01402 | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | ATP:guanido phosphotransferase, C-terminal catalytic domain protein. | 0.782 |
clpB | EFI41507.1 | HMPREF0629_00457 | HMPREF0629_00129 | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | DnaJ domain protein. | 0.767 |
clpB | EFI41828.1 | HMPREF0629_00457 | HMPREF0629_00456 | Chaperone protein ClpB; Belongs to the ClpA/ClpB family. | DnaJ domain protein. | 0.945 |
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