STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI42128.1Hypothetical protein. (264 aa)    
Predicted Functional Partners:
EFI41379.1
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
    
 0.752
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.680
EFI42234.1
Hypothetical protein.
  
     0.678
EFI41487.1
Hypothetical protein.
  
  
 0.640
EFI41662.1
DnaD domain protein.
  
     0.633
EFI42123.1
Hypothetical protein.
 
  
  0.628
EFI41841.1
Hypothetical protein.
  
     0.601
EFI42142.1
Tetratricopeptide repeat protein.
  
     0.591
EFI42347.1
UBA/TS-N domain protein.
  
     0.539
EFI42127.1
UvrD/REP helicase.
       0.534
Your Current Organism:
Peptoniphilus sp. F0131
NCBI taxonomy Id: 575609
Other names: P. sp. oral taxon 386 str. F0131, Peptoniphilus sp. oral taxon 386 str. F0131, Peptoniphilus sp. oral taxon 386 strain F0131
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.