Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFI42290.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
EFI42287.1
Ser/Thr phosphatase family protein.
  
 0.993
EFI42289.1
Hypothetical protein.
 
     0.954
EFI42288.1
RecF/RecN/SMC N-terminal domain protein.
 
     0.946
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.895
EFI42636.1
Hypothetical protein.
  
     0.774
EFI42637.1
NurA domain protein.
  
     0.774
EFI42285.1
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
       0.768
EFI42123.1
Hypothetical protein.
 
     0.665
lexA
Repressor LexA; Belongs to the peptidase S24 family.
   
  
 0.632
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
       0.609
Your Current Organism:
Peptoniphilus sp. F0131
NCBI taxonomy Id: 575609
Other names: P. sp. oral taxon 386 str. F0131, Peptoniphilus sp. oral taxon 386 str. F0131, Peptoniphilus sp. oral taxon 386 strain F0131
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