STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI42577.1Hypothetical protein. (728 aa)    
Predicted Functional Partners:
EFI41618.1
Exo-glucosaminidase LytG family protein; exo-beta-N-acetylglucosaminidase lytG; peptidoglycan hydrolase lytG; autolysinlytG.
  
  
 0.869
EFI42578.1
Hypothetical protein.
       0.793
EFI41364.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
  
    0.774
EFI41678.1
Putative RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
  
  
 0.727
EFI42520.1
Hypothetical protein.
  
  
 0.727
EFI42554.1
Sigma-70, region 4.
  
  
 0.727
leuS
leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.718
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.717
EFI41474.1
PSP1 C-terminal domain protein.
    
   0.717
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]
    
   0.717
Your Current Organism:
Peptoniphilus sp. F0131
NCBI taxonomy Id: 575609
Other names: P. sp. oral taxon 386 str. F0131, Peptoniphilus sp. oral taxon 386 str. F0131, Peptoniphilus sp. oral taxon 386 strain F0131
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.