Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFI41387.1 | apt | HMPREF0629_00006 | HMPREF0629_01352 | Hypothetical protein. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.912 |
EFI41387.1 | cdd | HMPREF0629_00006 | HMPREF0629_01028 | Hypothetical protein. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.911 |
EFI41387.1 | deoD | HMPREF0629_00006 | HMPREF0629_01249 | Hypothetical protein. | Purine nucleoside phosphorylase. | 0.887 |
EFI41387.1 | hpt | HMPREF0629_00006 | HMPREF0629_01379 | Hypothetical protein. | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.894 |
EFI41387.1 | pncB | HMPREF0629_00006 | HMPREF0629_00395 | Hypothetical protein. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.907 |
EFI41387.1 | pyn | HMPREF0629_00006 | HMPREF0629_00695 | Hypothetical protein. | Pyrimidine-nucleoside phosphorylase. | 0.905 |
EFI41387.1 | tdk | HMPREF0629_00006 | HMPREF0629_01405 | Hypothetical protein. | Thymidine kinase. | 0.894 |
EFI41387.1 | upp | HMPREF0629_00006 | HMPREF0629_00384 | Hypothetical protein. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.893 |
EFI41387.1 | xpt | HMPREF0629_00006 | HMPREF0629_00545 | Hypothetical protein. | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.912 |
apt | EFI41387.1 | HMPREF0629_01352 | HMPREF0629_00006 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Hypothetical protein. | 0.912 |
apt | deoD | HMPREF0629_01352 | HMPREF0629_01249 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Purine nucleoside phosphorylase. | 0.946 |
apt | hpt | HMPREF0629_01352 | HMPREF0629_01379 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.921 |
apt | xpt | HMPREF0629_01352 | HMPREF0629_00545 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.913 |
cdd | EFI41387.1 | HMPREF0629_01028 | HMPREF0629_00006 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Hypothetical protein. | 0.911 |
cdd | deoD | HMPREF0629_01028 | HMPREF0629_01249 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Purine nucleoside phosphorylase. | 0.910 |
cdd | pyn | HMPREF0629_01028 | HMPREF0629_00695 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Pyrimidine-nucleoside phosphorylase. | 0.975 |
cdd | tdk | HMPREF0629_01028 | HMPREF0629_01405 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Thymidine kinase. | 0.958 |
cdd | upp | HMPREF0629_01028 | HMPREF0629_00384 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.573 |
deoD | EFI41387.1 | HMPREF0629_01249 | HMPREF0629_00006 | Purine nucleoside phosphorylase. | Hypothetical protein. | 0.887 |
deoD | apt | HMPREF0629_01249 | HMPREF0629_01352 | Purine nucleoside phosphorylase. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.946 |
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