Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFI42677.1 | EFI42678.1 | HMPREF0629_01339 | HMPREF0629_01340 | Phosphoglycerate mutase family protein. | MutS domain V protein. | 0.806 |
EFI42678.1 | EFI42677.1 | HMPREF0629_01340 | HMPREF0629_01339 | MutS domain V protein. | Phosphoglycerate mutase family protein. | 0.806 |
EFI42678.1 | mutL | HMPREF0629_01340 | HMPREF0629_00945 | MutS domain V protein. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.792 |
EFI42678.1 | rplT | HMPREF0629_01340 | HMPREF0629_00997 | MutS domain V protein. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.698 |
EFI42678.1 | rplU | HMPREF0629_01340 | HMPREF0629_01083 | MutS domain V protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.683 |
EFI42678.1 | rpmA | HMPREF0629_01340 | HMPREF0629_01081 | MutS domain V protein. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.683 |
EFI42678.1 | rpmB | HMPREF0629_01340 | HMPREF0629_01386 | MutS domain V protein. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.689 |
EFI42678.1 | rpmI | HMPREF0629_01340 | HMPREF0629_00998 | MutS domain V protein. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.698 |
EFI42678.1 | rpsD | HMPREF0629_01340 | HMPREF0629_01372 | MutS domain V protein. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.793 |
EFI42678.1 | rpsO | HMPREF0629_01340 | HMPREF0629_00922 | MutS domain V protein. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.689 |
EFI42678.1 | rpsU | HMPREF0629_01340 | HMPREF0629_01036 | MutS domain V protein. | Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.698 |
mutL | EFI42678.1 | HMPREF0629_00945 | HMPREF0629_01340 | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | MutS domain V protein. | 0.792 |
rplT | EFI42678.1 | HMPREF0629_00997 | HMPREF0629_01340 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | MutS domain V protein. | 0.698 |
rplT | rplU | HMPREF0629_00997 | HMPREF0629_01083 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplT | rpmA | HMPREF0629_00997 | HMPREF0629_01081 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.994 |
rplT | rpmB | HMPREF0629_00997 | HMPREF0629_01386 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.990 |
rplT | rpmI | HMPREF0629_00997 | HMPREF0629_00998 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.998 |
rplT | rpsD | HMPREF0629_00997 | HMPREF0629_01372 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.994 |
rplT | rpsO | HMPREF0629_00997 | HMPREF0629_00922 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.995 |
rplT | rpsU | HMPREF0629_00997 | HMPREF0629_01036 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.983 |
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