STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g048663Receptor protein kinase TMK1-like protein. (227 aa)    
Predicted Functional Partners:
L195_g009119
Mitogen-activated protein kinase kinase kinase 1-like protein.
  
 
   0.551
L195_g037896
Elongation factor 1-gamma-like protein; Belongs to the GST superfamily.
    
  0.542
L195_g039086
Elongation factor 1-gamma-like protein.
    
  0.542
L195_g023908
Elongation factor 1-gamma-like protein.
    
  0.542
L195_g010089
Mitogen-activated protein kinase kinase kinase a-like protein.
  
 
   0.521
L195_g016636
PHD finger-like domain-containing protein 5b-like.
    
  0.516
L195_g001211
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
    
 0.506
L195_g020144
ATP binding protein.
  
 
   0.495
L195_g014721
Small nuclear ribonucleoprotein-associated protein.
    
 0.493
L195_g043105
Putative small nuclear ribonucleoprotein F-like.
    
  0.492
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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