STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g048533Beta-carotene hydroxylase. (87 aa)    
Predicted Functional Partners:
L195_g013104
Lycopene beta-cyclase.
   
 
 0.917
L195_g014306
Violaxanthin de-epoxidase chloroplastic-like; Belongs to the calycin superfamily. Lipocalin family.
     
 0.904
L195_g005951
Carotene epsilon-monooxygenase chloroplastic-like; Belongs to the cytochrome P450 family.
     
 0.903
L195_g012300
ENT domain-containing protein.
     
 0.893
L195_g018203
Protein lutein deficient 5 chloroplastic-like.
     
 0.889
L195_g011770
Capsanthin/capsorubin synthase chromoplast-like.
   
 
 0.843
L195_g011771
Capsanthin/capsorubin synthase chromoplast-like.
   
 
 0.843
L195_g023654
Phytoene synthase.
      
 0.661
L195_g009834
Phytoene synthase.
      
 0.661
L195_g015324
Zeaxanthin epoxidase chloroplastic-like.
     
 0.644
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.