STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g049826Ornithine decarboxylase. (288 aa)    
Predicted Functional Partners:
L195_g003028
Diaminopimelate epimerase chloroplastic-like.
  
 0.909
L195_g019744
Ornithine cyclodeaminase.
  
 
 0.904
L195_g020340
Argininosuccinate lyase-like protein.
  
 
 0.902
L195_g021965
Agmatine deiminase-like protein.
    
 0.898
L195_g005894
Biotin synthase-like protein.
    
 0.897
L195_g003031
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-26-diaminopimelate ligase-like protein.
     
 0.884
PURA
Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
   
 
 0.876
L195_g018827
Ornithine aminotransferase.
    
 0.876
L195_g029506
Diamine acetyltransferase 1-like protein.
    
 0.867
L195_g025727
N-carbamoylputrescine amidase.
    
 0.858
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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