STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g058271Uncharacterized protein. (194 aa)    
Predicted Functional Partners:
L195_g034280
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.987
L195_g005937
FACT complex subunit spt16-like protein.
   
 0.987
L195_g000374
DNA-directed RNA polymerase ii subunit rpb3-a-like protein.
    
 0.976
L195_g014788
DNA-directed RNA polymerase ii subunit rpb3-a-like protein.
    
 0.976
L195_g043014
DNA-directed RNA polymerase ii subunit rpb4-like protein.
    
 0.975
L195_g009383
DNA-directed RNA polymerase ii subunit rpb4-like protein.
    
 0.975
L195_g031548
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.972
L195_g034768
DNA-directed RNA polymerase ii subunit rpb9-like protein.
    
 0.972
L195_g044261
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.972
L195_g005926
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.972
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.