STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g058381Reverse transcriptase Ty1/copia-type domain-containing protein. (135 aa)    
Predicted Functional Partners:
L195_g001970
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 0.535
L195_g026331
Uncharacterized protein.
  
     0.489
L195_g016109
Protein transport inhibitor response 1-like.
    
  0.479
L195_g005033
Protein transport inhibitor response 1-like.
    
  0.479
L195_g011219
Protein transport inhibitor response 1-like.
    
  0.463
L195_g028644
Copia-type polyprotein.
  
     0.460
L195_g016453
Pentatricopeptide repeat-containing protein mitochondrial-like.
  
     0.457
L195_g001990
Histone deacetylase.
  
     0.454
L195_g059738
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.450
L195_g057079
Heat shock protein.
  
     0.439
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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