STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g050094Pyruvate decarboxylase. (176 aa)    
Predicted Functional Partners:
L195_g026908
Ketose-bisphosphate aldolase class-II family protein.
   
 
 0.935
L195_g025485
Ketose-bisphosphate aldolase class-II family protein.
   
 
 0.935
L195_g000848
Ketose-bisphosphate aldolase class-II family protein.
   
 
 0.935
L195_g000850
Ketose-bisphosphate aldolase class-II family protein.
   
 
 0.935
L195_g012126
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
 0.883
L195_g001225
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
 0.882
L195_g033743
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.880
L195_g003387
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.880
L195_g009879
Transaldolase.
   
 
 0.838
L195_g035453
Histidinol-phosphate aminotransferase chloroplastic-like.
    
 0.829
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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