STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g050675DUF569 domain-containing protein. (200 aa)    
Predicted Functional Partners:
L195_g047685
Lipoxygenase.
  
 
  0.598
L195_g049895
NAC domain-containing protein.
  
 
  0.591
L195_g022832
MYB family transcription factor apl-like protein.
  
 
  0.590
remorin-3
Remorin.
  
 
  0.589
L195_g055920
Early nodulin-like protein 1-like.
  
 
  0.580
L195_g009863
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
  0.576
L195_g057576
Endoglucanase 12-like protein.
  
  
  0.570
L195_g018505
Auxin-induced protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
  0.569
L195_g039936
NAC domain-containing protein.
  
 
  0.564
L195_g011882
Mitochondrial GTPase 1-like protein.
  
  0.562
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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