STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g061482D-tyrosyl-tRNA(Tyr) deacylase. (62 aa)    
Predicted Functional Partners:
L195_g003656
Serine/threonine-protein phosphatase.
   
   0.635
L195_g012783
Tyrosine--tRNA ligase.
     
 0.524
L195_g011403
Putative 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic-like.
     
 0.512
L195_g025541
Tyrosine-tRNA ligase-like protein.
     
 0.505
L195_g006475
Tyrosine-tRNA ligase-like protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.505
L195_g036896
Sec-independent translocase protein TATA chloroplastic-like.
     
 0.501
L195_g007946
Sec-independent translocase protein TATA chloroplastic-like.
     
 0.501
L195_g000777
Tyrosyl-tRNA synthetase.
     
 0.498
L195_g052331
Glycine-tRNA ligase 1 mitochondrial-like.
     
 0.496
L195_g017645
Glycine-tRNA ligase 1 mitochondrial-like.
     
 0.496
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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