STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g054364Cationic amino acid transporter. (113 aa)    
Predicted Functional Partners:
L195_g031470
3-dehydroquinate synthase.
   
 0.626
L195_g015969
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
   
 0.626
L195_g018462
3-dehydroquinate synthase.
   
 0.626
L195_g006524
Bifunctional 3-dehydroquinate dehydratase/shikimate chloroplastic-like.
   
 0.626
L195_g012398
3-phosphoshikimate 1-carboxyvinyltransferase chloroplastic-like.
   
 0.626
L195_g030875
Chromatin structure-remodeling complex protein SYD.
    
  0.547
L195_g021399
Chromatin structure-remodeling complex protein SYD.
    
  0.547
L195_g003096
Chromatin structure-remodeling complex protein SYD.
    
  0.547
L195_g009512
Chromatin structure-remodeling complex protein SYD.
    
  0.547
L195_g041778
Cell differentiation protein rcd1.
      
 0.542
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.