STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g054664RBR-type E3 ubiquitin transferase. (274 aa)    
Predicted Functional Partners:
L195_g056897
Ubiquitin-40S ribosomal protein S27a-like.
    
  0.716
L195_g039964
Ubiquitin-40S ribosomal protein S27a-like.
    
  0.716
L195_g046665
RING-box protein 1a-like.
    
 0.662
L195_g011367
RING-box protein 1a-like.
    
 0.662
L195_g005705
Ubiquitin-60S ribosomal protein L40-like.
    
  0.658
L195_g007270
Ubiquitin-60S ribosomal protein L40-like.
    
  0.658
L195_g042271
Ubiquitin-60S ribosomal protein L40-like.
    
  0.658
L195_g027496
E3 ubiquitin-protein ligase.
   
 
 0.611
L195_g041060
E3 ubiquitin-protein ligase upl4-like protein.
   
 
 0.611
L195_g005281
E3 ubiquitin-protein ligase upl4-like protein.
   
 
 0.611
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.