STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g015198Cyclin-u4-1-like protein. (112 aa)    
Predicted Functional Partners:
L195_g010130
ATP-dependent DNA helicase 2 subunit ku80-like protein.
    
 0.974
L195_g012443
DNA repair protein XRCC4-like.
    
 0.925
L195_g020426
Glycerophosphodiester phosphodiesterase gde1-like protein.
    
 0.912
L195_g041303
DNA ligase 4-like protein.
    
 0.854
L195_g001847
DNA ligase 4-like protein.
    
 0.854
L195_g013186
DNA ligase 4-like protein.
    
 0.854
L195_g053776
ATP-dependent DNA ligase.
   
 0.816
L195_g004779
ATP-dependent DNA ligase.
   
 0.816
L195_g014580
ATP-dependent DNA ligase.
   
 0.816
L195_g013955
Cyclin-dependent kinase b2-2-like protein; Belongs to the protein kinase superfamily.
    
 0.747
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.