STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g025218Uncharacterized protein. (309 aa)    
Predicted Functional Partners:
L195_g018699
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.991
L195_g000824
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.988
L195_g001781
H/ACA ribonucleoprotein complex subunit 2-like protein.
  
 0.988
L195_g019506
H/ACA ribonucleoprotein complex subunit 3-like protein.
   
 0.983
L195_g030323
Ribosomal L7Ae/L30e/S12e/Gadd45 family protein.
  
 0.908
L195_g014160
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.908
L195_g023603
RuvB-like helicase; Belongs to the RuvB family.
   
 0.892
L195_g012290
UPF0202 plant-like protein.
   
 
 0.876
L195_g016855
Putative ribosome-binding factor A chloroplastic-like.
  
  
 0.875
L195_g017873
D-aminoacyl-tRNA deacylase-like protein.
    
   0.872
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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