STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g010596U1 small nuclear ribonucleoprotein A-like. (243 aa)    
Predicted Functional Partners:
L195_g005845
U2 small nuclear ribonucleoprotein A.
   
 0.990
L195_g043105
Putative small nuclear ribonucleoprotein F-like.
   
 0.989
L195_g001211
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.989
L195_g014721
Small nuclear ribonucleoprotein-associated protein.
   
 0.989
L195_g052206
Small nuclear ribonucleoprotein Sm D2.
   
 0.988
L195_g051556
Pre-mRNA branch site p14-like protein.
   
 0.987
L195_g016636
PHD finger-like domain-containing protein 5b-like.
   
 0.987
L195_g008841
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.987
L195_g056642
U1 small nuclear ribonucleoprotein C-like.
   
 0.983
L195_g047286
U1 small nuclear ribonucleoprotein C-like.
   
 0.983
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.